As far as the basic design of the transom other that height there shouldn’t be any differences in a transom with a bracket that a transom without a bracket. But on notched transoms there is a sump area for water where with a bracked boat no sump area in needed. You will have to add a sump and some more scuppers for the sump area. I still might call up Dusky and ask these questions to them as well.
FellowShip
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My motto: Just for the Grins
