Based on Hilton Head and on that water 90% of my time. Have run the ICW from St. Augustine to Beaufort SC and think the area you are talking about is really cool. Check out the camping available at the Cumberland Island National Seashore. That place is amazing.
Closer to me and up to Charleston a great resource is the Coastal Expeditions map. Made by a kayak outfitter from Charleston it lists all the boat ramps and marinas etc. for the entire South Carolina coast. Look up Jolly Shores on Daufuskie Island. Its a house with a dock on the ICW just north of the ICW cuts that put you in the Savannah River. Awesome spot to make a home base. Daufuskie has fairly undisturbed beaches. You would be in an area with 7.5 feet of average tide change and enough acres of salt marsh to get lost but also close to fuel at Hilton Head marinas and boat ramps. Oysters, shrimp, blue crab reds, trout, flounder etc.
Look at Camping at Hunting Island and Edisto Island state parks in South Carolina as well.
Amazing nature and history around here and seriously more salt marsh than you can imagine.
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